covidseir-package
The 'covidseir' package.
fit_seir()
Fit a Stan SEIR model
get_doubling_time()
Get the doubling time
get_rt()
Get equivalent Rt values
get_threshold()
Get the contact rate fraction threshold for increases
plot_projection() plot_residuals()
plot_projection()
plot_residuals()
Plot a SEIR model projection
post2prior()
Extract new priors from a previous fit
project_seir()
Make a projection with a SEIR fit
tidy_seir()
Generate a 'tidy' data frame of summarized projection output